forked from Ponysearch/Ponysearch
parent
df0d915806
commit
d20bba6dc7
3 changed files with 8 additions and 13 deletions
|
@ -11,9 +11,11 @@
|
||||||
More info on api: https://www.ncbi.nlm.nih.gov/books/NBK25501/
|
More info on api: https://www.ncbi.nlm.nih.gov/books/NBK25501/
|
||||||
"""
|
"""
|
||||||
|
|
||||||
|
from flask_babel import gettext
|
||||||
from lxml import etree
|
from lxml import etree
|
||||||
from datetime import datetime
|
from datetime import datetime
|
||||||
from searx.url_utils import urlencode, urlopen
|
from searx.url_utils import urlencode
|
||||||
|
from searx.poolrequests import get
|
||||||
|
|
||||||
|
|
||||||
categories = ['science']
|
categories = ['science']
|
||||||
|
@ -46,12 +48,7 @@ def response(resp):
|
||||||
pubmed_retrieve_api_url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?'\
|
pubmed_retrieve_api_url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?'\
|
||||||
+ 'db=pubmed&retmode=xml&id={pmids_string}'
|
+ 'db=pubmed&retmode=xml&id={pmids_string}'
|
||||||
|
|
||||||
# handle Python2 vs Python3 management of bytes and strings
|
pmids_results = etree.XML(resp.content)
|
||||||
try:
|
|
||||||
pmids_results = etree.XML(resp.text.encode('utf-8'))
|
|
||||||
except AttributeError:
|
|
||||||
pmids_results = etree.XML(resp.text)
|
|
||||||
|
|
||||||
pmids = pmids_results.xpath('//eSearchResult/IdList/Id')
|
pmids = pmids_results.xpath('//eSearchResult/IdList/Id')
|
||||||
pmids_string = ''
|
pmids_string = ''
|
||||||
|
|
||||||
|
@ -62,7 +59,7 @@ def response(resp):
|
||||||
|
|
||||||
retrieve_url_encoded = pubmed_retrieve_api_url.format(**retrieve_notice_args)
|
retrieve_url_encoded = pubmed_retrieve_api_url.format(**retrieve_notice_args)
|
||||||
|
|
||||||
search_results_xml = urlopen(retrieve_url_encoded).read()
|
search_results_xml = get(retrieve_url_encoded).content
|
||||||
search_results = etree.XML(search_results_xml).xpath('//PubmedArticleSet/PubmedArticle/MedlineCitation')
|
search_results = etree.XML(search_results_xml).xpath('//PubmedArticleSet/PubmedArticle/MedlineCitation')
|
||||||
|
|
||||||
for entry in search_results:
|
for entry in search_results:
|
||||||
|
@ -74,12 +71,12 @@ def response(resp):
|
||||||
try:
|
try:
|
||||||
content = entry.xpath('.//Abstract/AbstractText')[0].text
|
content = entry.xpath('.//Abstract/AbstractText')[0].text
|
||||||
except:
|
except:
|
||||||
content = 'No abstract is available for this publication.'
|
content = gettext('No abstract is available for this publication.')
|
||||||
|
|
||||||
# If a doi is available, add it to the snipppet
|
# If a doi is available, add it to the snipppet
|
||||||
try:
|
try:
|
||||||
doi = entry.xpath('.//ELocationID[@EIdType="doi"]')[0].text
|
doi = entry.xpath('.//ELocationID[@EIdType="doi"]')[0].text
|
||||||
content = 'DOI: ' + doi + ' Abstract: ' + content
|
content = 'DOI: {doi} Abstract: {content}'.format(doi=doi, content=content)
|
||||||
except:
|
except:
|
||||||
pass
|
pass
|
||||||
|
|
||||||
|
|
|
@ -464,7 +464,7 @@ engines:
|
||||||
engine : pubmed
|
engine : pubmed
|
||||||
shortcut : pub
|
shortcut : pub
|
||||||
categories: science
|
categories: science
|
||||||
oa_first : false
|
timeout : 3.0
|
||||||
|
|
||||||
- name : qwant
|
- name : qwant
|
||||||
engine : qwant
|
engine : qwant
|
||||||
|
|
|
@ -3,7 +3,6 @@ from sys import version_info
|
||||||
if version_info[0] == 2:
|
if version_info[0] == 2:
|
||||||
from urllib import quote, quote_plus, unquote, urlencode
|
from urllib import quote, quote_plus, unquote, urlencode
|
||||||
from urlparse import parse_qs, parse_qsl, urljoin, urlparse, urlunparse, ParseResult
|
from urlparse import parse_qs, parse_qsl, urljoin, urlparse, urlunparse, ParseResult
|
||||||
from urllib2 import urlopen
|
|
||||||
else:
|
else:
|
||||||
from urllib.parse import (
|
from urllib.parse import (
|
||||||
parse_qs,
|
parse_qs,
|
||||||
|
@ -17,7 +16,6 @@ else:
|
||||||
urlunparse,
|
urlunparse,
|
||||||
ParseResult
|
ParseResult
|
||||||
)
|
)
|
||||||
from urllib.request import urlopen
|
|
||||||
|
|
||||||
|
|
||||||
__export__ = (parse_qs,
|
__export__ = (parse_qs,
|
||||||
|
|
Loading…
Reference in a new issue